# SLICSel DNA-RNA thermodynamics table
#
# Format: PQ/RS dH dS
# P,Q,R,S - nucleotides
# dH Enthalpy (cal/mol)
# dS Enthropy (kcal/mol*K)
#
# Sources:

# Watson-Crick-Pairs
#
# Sugimoto, N., Nakano, S., Katoh, M., Matsumura, A., Nakamuta, H., Ohmichi,
# T., Yoneyama, M. & Sasaki, M. (1995). Thermodynamic parameters to predict
# stability of RNA/DNA hybrid duplexes. Biochemistry 34, 11211-11216.
#
#
# Mismatches
#
# Sugimoto, N., Nakano, M. & Nakano, S. (2000). Thermodynamics-structure
# relationship of single mismatches in RNA/DNA duplexes. Biochemistry 39,
# 11270-11281.
#
#
#
AA/TA -4000.00 -5.39
AA/TC -4000.00 -5.07
AA/TG -4000.00 -5.39
AA/AT 0.00 -2.58
AA/CT 0.00 -2.25
AA/GT 0.00 -1.93
AA/TT -6130.00 -17.45
AC/TA -4000.00 -8.29
AC/TC -4000.00 -7.97
AC/AG 0.00 -2.58
AC/CG 0.00 -2.90
AC/GG 0.00 -0.97
AC/TG -8800.00 -23.73
AC/TT -4000.00 -8.94
AG/TA -4000.00 -5.39
AG/AC 0.00 -2.58
AG/CC 0.00 -2.25
AG/GC 0.00 -1.93
AG/TC -4360.00 -9.29
AG/TG -4000.00 -5.39
AG/TT -4320.01 -9.98
AT/AA 0.00 -2.58
AT/CA 0.00 -2.25
AT/GA 0.00 -1.93
AT/TA -7370.00 -21.54
AT/TC -4000.00 -6.68
AT/TG -3460.00 -6.94
AT/TT -4000.00 -7.65
CA/GA -4000.00 -5.39
CA/GC -4000.00 -5.07
CA/GG -4000.00 -5.39
CA/AT 0.00 0.32
CA/CT 0.00 -1.61
CA/GT -7880.00 -19.22
CA/TT 0.00 -0.96
CC/GA -4000.00 -8.29
CC/GC -4000.00 -7.97
CC/AG 0.00 0.96
CC/CG 0.00 -1.61
CC/GG -11690.00 -28.83
CC/TG 0.00 0.00
CC/GT -4000.00 -8.94
CG/GA -4000.00 -5.39
CG/AC 0.00 0.32
CG/CC 0.00 -1.61
CG/GC -13720.00 -36.79
CG/TC 0.00 -0.96
CG/GG -4000.00 -5.39
CG/GT -6720.00 -14.93
CT/AA 0.00 0.32
CT/CA 0.00 -1.61
CT/GA -8640.00 -22.67
CT/TA 0.00 -0.96
CT/GC -4000.00 -6.68
CT/GG -6760.00 -15.16
CT/GT -4000.00 -7.65
GA/CA -4000.00 -5.39
GA/CC -4000.00 -5.07
GA/CG -4000.00 -5.39
GA/AT 0.00 -0.96
GA/CT -7630.00 -18.55
GA/GT 0.00 -1.61
GA/TT -11720.00 -34.49
GC/CA -4000.00 -8.29
GC/CC -4000.00 -7.97
GC/AG 0.00 -1.94
GC/CG -8360.00 -18.19
GC/GG 0.00 -1.61
GC/TG -11480.00 -29.73
GC/CT -4000.00 -8.94
GG/CA -4000.00 -5.39
GG/AC 0.00 -0.96
GG/CC -6810.00 -13.97
GG/GC 0.00 -1.61
GG/TC -11000.00 -29.46
GG/CG -4000.00 -5.39
GG/CT -9440.00 -23.32
GT/AA 0.00 -0.96
GT/CA -7280.00 -17.47
GT/GA 0.00 -1.61
GT/TA -7700.00 -21.23
GT/CC -4000.00 -6.68
GT/CG -7240.00 -15.42
GT/CT -4000.00 -7.65
TA/AA -2000.00 0.74
TA/AC -2000.00 -0.24
TA/AG -2000.00 0.41
TA/AT -7630.00 -20.67
TA/CT 0.00 -2.25
TA/GT -12340.00 -35.02
TA/TT 0.00 -1.61
TC/AA -2000.00 -3.13
TC/AC -2000.00 -1.52
TC/AG -7360.00 -18.22
TC/CG 0.00 -3.23
TC/GG -13680.00 -37.63
TC/TG 0.00 -1.61
TC/AT -2000.00 -2.50
TG/AA -2000.00 -0.56
TG/AC -7600.00 -19.09
TG/CC 0.00 -2.25
TG/GC -10960.00 -29.24
TG/TC 0.00 -1.61
TG/AG -2000.00 0.41
TG/AT -8100.00 -20.72
TT/AA -6880.00 -18.89
TT/CA 0.00 -2.25
TT/GA -8560.00 -24.28
TT/TA 0.00 -1.61
TT/AC -2000.00 -0.88
TT/AG -7480.00 -20.19
TT/AT -2000.00 -1.85

