Download k-mer lists and datasets

  1. K-mer databases
    • k-mer databases are downloadable here

  2. FastGT binaries
    • Gmer_counter and gmer_caller are downloadable here
    • The source code for both is available at GitHub

  3. Example of FastGT input files
    • 50x coverage sequencing data for Platinum family ERP001960 is available from ENA database (ca 400 GB per individual)

  4. Example of FastGT output files
    • K-mer frequencies (gmer_counter output) from a Platinum individual NA12877.counts (384 MB)
    • Genotypes (gmer_caller output) from a Platinum individual NA12877.calls (318 MB)
    • K-mer frequencies (gmer_counter output) from a Platinum individual NA12878.counts (383 MB)
    • Genotypes (gmer_caller output) from a Platinum individual NA12878.calls (317 MB)

All k-mer databases available through this website are distributed under CC BY-NC-SA licence.

The binaries and source code of gmer_counter/gmer_caller are distributed under GNU GPL v3.